4PED Transferase date Apr 23, 2014
title Mitochondrial Adck3 Employs An Atypical Protein Kinase-Like Enable Coenzyme Q Biosynthes
authors C.A.Bingman, R.Smith, S.Joshi, J.A.Stefely, A.G.Reidenbach, A.Ulb O.Oruganty, B.J.Floyd, A.Jochem, J.M.Saunders, I.E.Johnson, R.L. G.E.Barber, D.Lee, S.Li, N.Kannan, J.J.Coon, D.J.Pagliarini, Mito Protein Partnership (Mpp)
compound source
Molecule: Chaperone Activity Of Bc1 Complex-Like, Mitochond
Chain: A
Fragment: Unp Residues 204-595
Synonym: Chaperone-Abc1-Like,Aarf Domain-Containing Protein
Ec: 2.7.11.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adck3, Cabc1, Pp265
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.165 R_Free 0.211
length a length b length c angle alpha angle beta angle gamma
148.671 54.557 45.009 90.00 94.00 90.00
method X-Ray Diffractionresolution 1.64 Å
ligand MSE, SO4 enzyme Transferase E.C.2.7.11 BRENDA

Primary referenceMitochondrial ADCK3 Employs an Atypical Protein Kinase-like Fold to Enable Coenzyme Q Biosynthesis., Stefely JA, Reidenbach AG, Ulbrich A, Oruganty K, Floyd BJ, Jochem A, Saunders JM, Johnson IE, Minogue CE, Wrobel RL, Barber GE, Lee D, Li S, Kannan N, Coon JJ, Bingman CA, Pagliarini DJ, Mol Cell. 2015 Jan 8;57(1):83-94. doi: 10.1016/j.molcel.2014.11.002. Epub 2014, Dec 11. PMID:25498144
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (4ped.pdb1.gz) 198 Kb
  • LPC: Ligand-Protein Contacts for 4PED
  • CSU: Contacts of Structural Units for 4PED
  • Structure Factors (443 Kb)
  • Retrieve 4PED in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PED from S2C, [Save to disk]
  • Re-refined 4ped structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PED in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PED
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4PED, from MSDmotif at EBI
  • Fold representative 4ped from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ped] [4ped_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PED
  • Community annotation for 4PED at PDBWiki (http://pdbwiki.org)

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