4ZZ7 Oxidoreductase date May 22, 2015
title Crystal Structure Of Methylmalonate-Semialdehyde Dehydrogena From Oceanimonas Doudoroffii
authors H.Do, C.W.Lee, S.G.Lee, H.Kang, C.M.Park, H.J.Kim, H.Park, H.Park, J
compound source
Molecule: Methylmalonate-Semialdehyde Dehydrogenase
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Engineered: Yes
Organism_scientific: Oceanimonas Doudoroffii
Organism_taxid: 84158
Gene: Dddc
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 2
R_factor 0.185 R_Free 0.246
length a length b length c angle alpha angle beta angle gamma
156.700 160.300 238.920 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand NAD enzyme
F, A, J, K, E, B, H, C, D, I, G, L

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (920 Kb) [Save to disk]
  • Biological Unit Coordinates (4zz7.pdb1.gz) 315 Kb
  • Biological Unit Coordinates (4zz7.pdb2.gz) 309 Kb
  • Biological Unit Coordinates (4zz7.pdb3.gz) 312 Kb
  • LPC: Ligand-Protein Contacts for 4ZZ7
  • CSU: Contacts of Structural Units for 4ZZ7
  • Structure Factors (2739 Kb)
  • Retrieve 4ZZ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZZ7 from S2C, [Save to disk]
  • Re-refined 4zz7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZZ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZZ7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4zz7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zz7_A] [4zz7_H] [4zz7_E] [4zz7_G] [4zz7] [4zz7_F] [4zz7_C] [4zz7_I] [4zz7_B] [4zz7_K] [4zz7_D] [4zz7_L] [4zz7_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ZZ7
  • Community annotation for 4ZZ7 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science