4ZZY Transferase date Apr 15, 2015
title Structure Of Human Parp2 Catalytic Domain Bound To An Isoindolinone Inhibitor
authors E.Casale, M.Fasolini, G.Papeo, H.Posteri, D.Borghi, A.A.Busel, F.C M.Ciomei, A.Cirla, E.Corti, M.Danello, M.Fasolini, E.R.Felder, B. A.Galvani, A.Isacchi, A.Khvat, M.Y.Krasavin, R.Lupi, P.Orsini, R. E.Pesenti, D.Pezzetta, S.Rainoldi, F.Riccardisirtori, A.Scolaro F.Zuccotto, D.Donati, A.Montagnoli
compound source
Molecule: Poly [Adp-Ribose] Polymerase 2
Chain: A
Fragment: Catalytic Domain, Unp Residues 223-583
Synonym: Parp-2, Hparp-2, Adp-Ribosyltransferase Diphtheria Toxin-Li Ke 2, Artd2, Nad(+) Adp-Ribosyltransferase 2, Adp Polyadp-Rib Ose Synthase 2, Padprt-2, Parp-2, Hparp-2, Adp-Ribosyltransferase Diphtheria Toxin-Like 2, Artd2, Nad Adp-Ribosyltransferase 2, A Dprt-2, Polyadp- Ribose Syntha Padprt-2, Poly Adp-Ribose Poly Merase 2, Poly Adp-Ribose Polymerase 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 43 21 2
R_factor 0.21618 R_Free 0.28037
length a length b length c angle alpha angle beta angle gamma
74.377 74.377 148.463 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand D7N enzyme Transferase E.C. BRENDA

Primary referenceDiscovery of 2-[1-(4,4-difluorocyclohexyl)piperidin-4-yl]-6-fluoro-3-oxo-2,3-dihydro-1H-isoind ole-4-carboxamide (NMS-P118): a Potent, Orally Available and Highly Selective PARP-1 Inhibitor for Cancer Therapy., Papeo GM, Posteri H, Borghi D, Busel AA, Caprera F, Casale E, Ciomei M, Cirla A, Corti E, D'Anello M, Fasolini M, Forte B, Galvani A, Isacchi A, Khvat A, Krasavin MY, Lupi R, Orsini P, Perego R, Pesenti E, Pezzetta D, Rainoldi S, Riccardi-Sirtori F, Scolaro A, Sola F, Zuccotto F, Felder ER, Donati D, Montagnoli A, J Med Chem. 2015 Jul 29. PMID:26222319
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (4zzy.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 4ZZY
  • CSU: Contacts of Structural Units for 4ZZY
  • Structure Factors (301 Kb)
  • Retrieve 4ZZY in mmCIF format [Save to disk]
  • Re-refined 4zzy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZZY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZZY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4zzy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zzy_A] [4zzy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ZZY
  • Community annotation for 4ZZY at PDBWiki (http://pdbwiki.org)

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