5D8L Transcription Dna date Aug 17, 2015
title Human Hsf2 Dna Binding Domain In Complex With 3-Site Hse Dna Angstroms Resolution
authors A.M.Jaeger, C.W.Pemble, D.J.Thiele
compound source
Molecule: Dna (5'- D(Pgptpgpapaptpaptptpcptpapgpapapcpc)-3');
Chain: A, G
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Heat Shock Factor Protein 2
Chain: B, D, F, H
Synonym: Hsf 2,Heat Shock Transcription Factor 2,Hstf 2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsf2, Hstf2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Gpgptptpcptpapgpapaptpaptptpcpapc)-3');
Chain: C, E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor 0.217 R_Free 0.273
length a length b length c angle alpha angle beta angle gamma
40.174 47.140 109.587 82.82 90.03 64.75
method X-Ray Diffractionresolution 2.07 Å
H, F, D, B

Primary referenceStructures of HSF2 reveal mechanisms for differential regulation of human heat-shock factors., Jaeger AM, Pemble CW 4th, Sistonen L, Thiele DJ, Nat Struct Mol Biol. 2016 Jan 4. doi: 10.1038/nsmb.3150. PMID:26727490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (5d8l.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (5d8l.pdb2.gz) 93 Kb
  • CSU: Contacts of Structural Units for 5D8L
  • Structure Factors (296 Kb)
  • Retrieve 5D8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D8L from S2C, [Save to disk]
  • Re-refined 5d8l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5D8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5D8L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5d8l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d8l_G] [5d8l_C] [5d8l_A] [5d8l_H] [5d8l_F] [5d8l_E] [5d8l] [5d8l_D] [5d8l_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5D8L: [HSF ] by SMART
  • Other resources with information on 5D8L
  • Community annotation for 5D8L at PDBWiki (http://pdbwiki.org)

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