5FM4 Structural Protein date Oct 30, 2015
title Structure Of The C-Terminally Extended Domain My4 Of Human M (Space Group P21)
authors S.Pernigo, R.A.Steiner
compound source
Molecule: Myomesin-1
Chain: A, B, C, D, E, F
Fragment: My4 Extended At Its C-Terminus, Unp Residues 510-
Synonym: 190 Kda Connectin-Associated Protein, 190 Kda Titi Associated Protein, Myomesin Family Member 1, Myomesin;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.261 R_Free 0.287
length a length b length c angle alpha angle beta angle gamma
43.530 156.840 48.260 90.00 94.38 90.00
method X-Ray Diffractionresolution 2.80 Å
Primary referenceBinding of Myomesin to Obscurin-Like-1 at the Muscle M-Band Provides a Strategy for Isoform-Specific Mechanical Protection., Pernigo S, Fukuzawa A, Beedle AE, Holt M, Round A, Pandini A, Garcia-Manyes S, Gautel M, Steiner RA, Structure. 2016 Dec 15. pii: S0969-2126(16)30357-4. doi:, 10.1016/j.str.2016.11.015. PMID:27989621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (5fm4.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (5fm4.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (5fm4.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (5fm4.pdb4.gz) 31 Kb
  • Biological Unit Coordinates (5fm4.pdb5.gz) 32 Kb
  • Biological Unit Coordinates (5fm4.pdb6.gz) 32 Kb
  • CSU: Contacts of Structural Units for 5FM4
  • Structure Factors (163 Kb)
  • Retrieve 5FM4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FM4 from S2C, [Save to disk]
  • Re-refined 5fm4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FM4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FM4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fm4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fm4_D] [5fm4_A] [5fm4] [5fm4_C] [5fm4_F] [5fm4_B] [5fm4_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FM4: [FN3 ] by SMART
  • Other resources with information on 5FM4
  • Community annotation for 5FM4 at PDBWiki (http://pdbwiki.org)

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