5NTN Signaling Protein date Apr 28, 2017
title Structural States Of Rorgt: X-Ray Elucidation Of Molecular M And Binding Interactions For Natural And Synthetic Compound
authors J.Kallen
compound source
Molecule: Nuclear Receptor Ror-Gamma
Chain: A, B, C, D
Fragment: C-Terminal Domain, Ligand Binding Domain
Synonym: Nuclear Receptor Rzr-Gamma,Nuclear Receptor Subfam Group F Member 3,Rar-Related Orphan Receptor C,Retinoid-Rel Orphan Receptor-Gamma;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rorc, Nr1f3, Rorg, Rzrg
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Derived Vector

Molecule: Nuclear Receptor-Interacting Protein 1
Chain: P, Q, R, S
Synonym: Nuclear Factor Rip140,Receptor-Interacting Protein

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.225
length a length b length c angle alpha angle beta angle gamma
86.238 69.684 97.208 90.00 107.94 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 98H enzyme
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (5ntn.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (5ntn.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (5ntn.pdb3.gz) 47 Kb
  • Biological Unit Coordinates (5ntn.pdb4.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5NTN
  • CSU: Contacts of Structural Units for 5NTN
  • Structure Factors (2287 Kb)
  • Retrieve 5NTN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NTN from S2C, [Save to disk]
  • Re-refined 5ntn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5NTN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NTN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ntn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ntn_Q] [5ntn_A] [5ntn_D] [5ntn_S] [5ntn_B] [5ntn_R] [5ntn_C] [5ntn_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NTN
  • Community annotation for 5NTN at PDBWiki (http://pdbwiki.org)

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