5TDQ Transport Protein date Sep 19, 2016
title Crystal Structure Of The Gold Domain Of Acbd3
authors J.A.Mcphail, J.E.Burke
compound source
Molecule: Golgi Resident Protein Gcp60
Chain: A
Fragment: Gold Domain, Unp Residues 367-528
Synonym: Acyl-Coa-Binding Domain-Containing Protein 3,Golgi Associated Protein 1,Gocap1,Golgi Phosphoprotein 1,Golph1,P Pka-Associated Protein 7,Peripheral Benzodiazepine Receptor Associated Protein Pap7;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acbd3, Gcp60, Gocap1, Golph1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Popth
symmetry Space Group: P 31 2 1
R_factor 0.238 R_Free 0.262
length a length b length c angle alpha angle beta angle gamma
55.510 55.510 140.150 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.49 Å
Primary referenceThe Molecular Basis of Aichi Virus 3A Protein Activation of Phosphatidylinositol 4 Kinase IIIbeta, PI4KB, through ACBD3., McPhail JA, Ottosen EH, Jenkins ML, Burke JE, Structure. 2016 Dec 7. pii: S0969-2126(16)30358-6. doi:, 10.1016/j.str.2016.11.016. PMID:27989622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (5tdq.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 5TDQ
  • Structure Factors (84 Kb)
  • Retrieve 5TDQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TDQ from S2C, [Save to disk]
  • Re-refined 5tdq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TDQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TDQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tdq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tdq] [5tdq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TDQ
  • Community annotation for 5TDQ at PDBWiki (http://pdbwiki.org)

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