5WS3 Signaling Protein date Dec 05, 2016
title Crystal Structures Of Human Orexin 2 Receptor Bound To The S Antagonist Empa Determined By Serial Femtosecond Crystallog Sacla
authors R.Suno, K.Kimura, T.Nakane, K.Yamashita, J.Wang, T.Fujiwara, Y.Yam D.Im, H.Tsujimoto, M.Sasanuma, S.Horita, T.Hirokawa, E.Nango, K.T T.Kameshima, T.Hatsui, Y.Joti, M.Yabashi, K.Shimamoto, M.Yamamot D.M.Rosenbaum, S.Iwata, T.Shimamura, T.Kobayashi
compound source
Molecule: Orexin Receptor Type 2,Glga Glycogen Synthase,Ore Receptor Type 2;
Chain: A
Fragment: Unp Residues 3-254,Unp Residues 218-413,Unp Resid 388;
Synonym: Ox2r,Hypocretin Receptor Type 2,Glycogen Synthase
Engineered: Yes
Other_details: Chimera Protein Of Unp Residues 3-254 From O Receptor Type 2 (O43614), Unp Residues 218-413 From Glga Gl Synthase (Q9v2j8), Unp Residues 294-388 From Orexin Recepto (O43614)
Organism_scientific: Homo Sapiens, Pyrococcus Abyssi (Strai Orsay);
Organism_common: Human
Organism_taxid: 9606, 272844
Strain: Ge5 Orsay
Gene: Hcrtr2, Pab2292
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free 0.219
length a length b length c angle alpha angle beta angle gamma
97.510 75.980 96.100 90.00 112.30 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 1PE, 7MA, OLA enzyme

Primary referenceCrystal Structures of Human Orexin 2 Receptor Bound to the Subtype-Selective Antagonist EMPA., Suno R, Kimura KT, Nakane T, Yamashita K, Wang J, Fujiwara T, Yamanaka Y, Im D, Horita S, Tsujimoto H, Tawaramoto MS, Hirokawa T, Nango E, Tono K, Kameshima T, Hatsui T, Joti Y, Yabashi M, Shimamoto K, Yamamoto M, Rosenbaum DM, Iwata S, Shimamura T, Kobayashi T, Structure. 2017 Nov 27. pii: S0969-2126(17)30358-1. doi:, 10.1016/j.str.2017.11.005. PMID:29225076
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (5ws3.pdb1.gz) 177 Kb
  • LPC: Ligand-Protein Contacts for 5WS3
  • CSU: Contacts of Structural Units for 5WS3
  • Structure Factors (610 Kb)
  • Retrieve 5WS3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WS3 from S2C, [Save to disk]
  • View 5WS3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WS3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ws3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ws3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WS3
  • Community annotation for 5WS3 at PDBWiki (http://pdbwiki.org)

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