1B0F Hydrolase date Nov 09, 1998
title Crystal Structure Of Human Neutrophil Elastase With Mdl 101,
authors H.A.Schreuder, W.A.Metz, N.P.Peet, J.T.Pelton, C.Tardif
compound source
Molecule: Protein (Elastase)
Chain: A
Synonym: Hne
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Neutrophil
symmetry Space Group: P 43 2 2
R_factor 0.160 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
75.800 75.800 108.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand FUC, NAG, SEI BindingDB enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1PPG

Primary referenceInhibition of human neutrophil elastase. 4. Design, synthesis, X-ray crystallographic analysis, and structure-activity relationships for a series of P2-modified, orally active peptidyl pentafluoroethyl ketones., Cregge RJ, Durham SL, Farr RA, Gallion SL, Hare CM, Hoffman RV, Janusz MJ, Kim HO, Koehl JR, Mehdi S, Metz WA, Peet NP, Pelton JT, Schreuder HA, Sunder S, Tardif C, J Med Chem 1998 Jul 2;41(14):2461-80. PMID:9651152
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1b0f.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1B0F
  • CSU: Contacts of Structural Units for 1B0F
  • Likely Quarternary Molecular Structure file(s) for 1B0F
  • Structure Factors (79 Kb)
  • Retrieve 1B0F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B0F from S2C, [Save to disk]
  • Re-refined 1b0f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1B0F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B0F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1B0F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b0fa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1b0f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b0f] [1b0f_A]
  • SWISS-PROT database: [P08246]
  • Domain organization of [ELNE_HUMAN] by SWISSPFAM
  • Domain found in 1B0F: [Tryp_SPc ] by SMART
  • Other resources with information on 1B0F
  • Community annotation for 1B0F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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