1BF5 Gene Regulation Dna date May 27, 1998
title Tyrosine Phosphorylated Stat-1dna Complex
authors J.Kuriyan, Y.Zhao, X.Chen, U.Vinkemeier, D.Jeruzalmi, J.E.Darnell
compound source
Molecule: Dna (5'- D(Apcpapgptptptpcpcpcpgptpapapaptpg Pc)-3
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Dna (5'- D(Tpgpcpaptptptpapcpgpgpgpapapapcpt Pg)-3
Chain: C
Engineered: Yes

Molecule: Signal Transducer And Activator Of Transcription Alphabeta;
Chain: A
Fragment: Residues 136-710
Synonym: Transcription Factor Isgf-3 Components P91p84, St
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.227 R_Free 0.293
length a length b length c angle alpha angle beta angle gamma
76.600 148.200 181.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand PTR enzyme
related structures by homologous chain: 1YVL

Primary referenceCrystal structure of a tyrosine phosphorylated STAT-1 dimer bound to DNA., Chen X, Vinkemeier U, Zhao Y, Jeruzalmi D, Darnell JE Jr, Kuriyan J, Cell 1998 May 29;93(5):827-39. PMID:9630226
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (1bf5.pdb1.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 1BF5
  • CSU: Contacts of Structural Units for 1BF5
  • Likely Quarternary Molecular Structure file(s) for 1BF5
  • Structure Factors (185 Kb)
  • Retrieve 1BF5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BF5 from S2C, [Save to disk]
  • Re-refined 1bf5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BF5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BF5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BF5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bf5a1, region A:136-316 [Jmol] [rasmolscript] [script source]
        - Domain d1bf5a2, region A:317-568 [Jmol] [rasmolscript] [script source]
        - Domain d1bf5a3, region A:569-710 [Jmol] [rasmolscript] [script source]
  • Fold representative 1bf5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bf5_B] [1bf5] [1bf5_A] [1bf5_C]
  • SWISS-PROT database: [P42224]
  • Domain organization of [STAT1_HUMAN] by SWISSPFAM
  • Domain found in 1BF5: [SH2 ] by SMART
  • Other resources with information on 1BF5
  • Community annotation for 1BF5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science