1BGO Hydrolase date May 29, 1998
title Crystal Structure Of Cysteine Protease Human Cathepsin K In With A Covalent Peptidomimetic Inhibitor
authors R.L.Desjarlais, D.S.Yamashita, H.J.Oh, W.E.Bondinell, I.N.Uzins K.F.Erhard, A.C.Allen, R.C.Haltiwanger, B.Zhao, W.W.Smith, S.S.A Meguid, K.D'Alessio, C.A.Janson, M.S.Mcqueney, T.A.Tomaszek, M.A D.F.Veber
compound source
Molecule: Cathepsin K
Chain: A
Engineered: Yes
Other_details: Inhibitor Covalently Bound To Active Site Cy
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Sf21
Cell: Osteoclast
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector: Baculovirus
symmetry Space Group: P 43
R_factor 0.240 R_Free 0.296
length a length b length c angle alpha angle beta angle gamma
71.550 71.550 55.090 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand I10 enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1AU4, 1AYV

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1bgo.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1BGO
  • CSU: Contacts of Structural Units for 1BGO
  • Likely Quarternary Molecular Structure file(s) for 1BGO
  • Retrieve 1BGO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BGO from S2C, [Save to disk]
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  • Visual 3D analysis of 1BGO
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BGO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bgo__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1bgo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bgo_A] [1bgo]
  • SWISS-PROT database: [P43235]
  • Domain organization of [CATK_HUMAN] by SWISSPFAM
  • Domain found in 1BGO: [Pept_C1 ] by SMART
  • Other resources with information on 1BGO
  • Community annotation for 1BGO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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