1BHG Glycosidase date Mar 04, 1996
title Human Beta-Glucuronidase At 2.6 A Resolution
authors S.Jain, W.B.Drendel
compound source
Molecule: Beta-Glucuronidase
Chain: A, B
Synonym: Gus Gene Product
Ec: 3.2.1.31
Engineered: Yes
Other_details: Lysosomal Enzyme
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Mouse L-Cell Line
Organ: Placenta
Organelle: Lysosome
Gene: Human Placental Gus Gene Cdna
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_plasmid: Pmsxnd
Expression_system_gene: Human Placental Gus Gene Cdna
symmetry Space Group: P 21 21 2
R_factor 0.231 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.100 124.400 134.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.53 Å
ligand BMA, MAN, NAG enzyme Hydrolase E.C.3.2.1.31 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of human beta-glucuronidase reveals candidate lysosomal targeting and active-site motifs., Jain S, Drendel WB, Chen ZW, Mathews FS, Sly WS, Grubb JH, Nat Struct Biol 1996 Apr;3(4):375-81. PMID:8599764
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (1bhg.pdb1.gz) 395 Kb
  • LPC: Ligand-Protein Contacts for 1BHG
  • CSU: Contacts of Structural Units for 1BHG
  • Likely Quarternary Molecular Structure file(s) for 1BHG
  • Retrieve 1BHG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BHG from S2C, [Save to disk]
  • View 1BHG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BHG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BHG, from MSDmotif at EBI
  • Genome occurence of 1BHG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bhga2, region A:22-225 [Jmol] [rasmolscript] [script source]
        - Domain d1bhga1, region A:226-328 [Jmol] [rasmolscript] [script source]
        - Domain d1bhga3, region A:329-632 [Jmol] [rasmolscript] [script source]
        - Domain d1bhgb2, region B:22-225 [Jmol] [rasmolscript] [script source]
        - Domain d1bhgb1, region B:226-328 [Jmol] [rasmolscript] [script source]
        - Domain d1bhgb3, region B:329-632 [Jmol] [rasmolscript] [script source]
  • Fold representative 1bhg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bhg] [1bhg_A] [1bhg_B]
  • SWISS-PROT database: [P08236]
  • Domain organization of [BGLR_HUMAN] by SWISSPFAM
  • Other resources with information on 1BHG
  • Community annotation for 1BHG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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