1BJ4 Transferase date Jul 02, 1998
title Recombinant Serine Hydroxymethyltransferase (Human)
authors S.B.Renwick, K.Snell
compound source
Molecule: Protein (Serine Hydroxymethyltransferase)
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Breast
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: T7 Expression Vector
Expression_system_vector: E.Coli
Expression_system_plasmid: Pet-14b
Expression_system_gene: Glyc_human
symmetry Space Group: P 62 2 2
R_factor 0.210 R_Free 0.226
length a length b length c angle alpha angle beta angle gamma
154.400 154.400 235.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.65 Å
ligand PLP enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1LS3, 1RVU

Primary referenceThe crystal structure of human cytosolic serine hydroxymethyltransferase: a target for cancer chemotherapy., Renwick SB, Snell K, Baumann U, Structure 1998 Sep 15;6(9):1105-16. PMID:9753690
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (1bj4.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 1BJ4
  • CSU: Contacts of Structural Units for 1BJ4
  • Likely Quarternary Molecular Structure file(s) for 1BJ4
  • Retrieve 1BJ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BJ4 from S2C, [Save to disk]
  • View 1BJ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BJ4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BJ4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bj4a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1bj4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bj4_A] [1bj4]
  • SWISS-PROT database: [P34896]
  • Domain organization of [GLYC_HUMAN] by SWISSPFAM
  • Other resources with information on 1BJ4
  • Community annotation for 1BJ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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