1BJM Immunoglobulin date May 26, 1995
title Loc Naks, A Lambda 1 Type Light-Chain Dimer (Bence-Jones Pro Crystallized In Nakso4
authors M.Schiffer, D.B.Huang
compound source
Molecule: Loc - Lambda 1 Type Light-Chain Dimer
Chain: A, B
Synonym: Bence-Jones Protein
Other_details: Crystallized In Nak So4
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.870 72.620 63.560 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand PCA enzyme
related structures by homologous chain: 1NL0, 1W72
Primary referenceThree quaternary structures for a single protein., Huang DB, Ainsworth CF, Stevens FJ, Schiffer M, Proc Natl Acad Sci U S A 1996 Jul 9;93(14):7017-21. PMID:8692936
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1bjm.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 1BJM
  • CSU: Contacts of Structural Units for 1BJM
  • Likely Quarternary Molecular Structure file(s) for 1BJM
  • Structure Factors (233 Kb)
  • Retrieve 1BJM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BJM from S2C, [Save to disk]
  • Re-refined 1bjm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1BJM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BJM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BJM, from MSDmotif at EBI
  • Genome occurence of 1BJM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bjma1, region A:1-111 [Jmol] [rasmolscript] [script source]
        - Domain d1bjma2, region A:112-216 [Jmol] [rasmolscript] [script source]
        - Domain d1bjmb1, region B:1-111 [Jmol] [rasmolscript] [script source]
        - Domain d1bjmb2, region B:112-216 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bjm_B] [1bjm] [1bjm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1BJM: [IG_like] [IGv ] by SMART
    • Other resources with information on 1BJM
  • Community annotation for 1BJM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1BJM from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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