1BZS Hydrolase date Nov 04, 1998
title Crystal Structure Of Mmp8 Complexed With Hmr2909
authors H.Schreuder, V.Brachvogel, P.Loenze
compound source
Molecule: Neutrophil Collagenase
Chain: A
Fragment: Catalytic Domain
Synonym: Mmp-8
Ec: 3.4.24.34
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Neutrophil
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Bl21
Expression_system_plasmid: Pet
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.100 68.900 70.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BSI, CA, EPE, ZN enzyme Hydrolase E.C.3.4.24.34 BRENDA
related structures by homologous chain: 1KBC, 830C
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceQuantitative structure-activity relationship of human neutrophil collagenase (MMP-8) inhibitors using comparative molecular field analysis and X-ray structure analysis., Matter H, Schwab W, Barbier D, Billen G, Haase B, Neises B, Schudok M, Thorwart W, Schreuder H, Brachvogel V, Lonze P, Weithmann KU, J Med Chem 1999 Jun 3;42(11):1908-20. PMID:10354399
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1bzs.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1BZS
  • CSU: Contacts of Structural Units for 1BZS
  • Likely Quarternary Molecular Structure file(s) for 1BZS
  • Structure Factors (178 Kb)
  • Retrieve 1BZS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BZS from S2C, [Save to disk]
  • Re-refined 1bzs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BZS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BZS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BZS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bzsa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1bzs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bzs] [1bzs_A]
  • SWISS-PROT database: [P22894]
  • Domain organization of [MMP8_HUMAN] by SWISSPFAM
  • Domain found in 1BZS: [ZnMc ] by SMART
  • Other resources with information on 1BZS
  • Community annotation for 1BZS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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