1BZS	Hydrolase	date	Nov 04, 1998
title	Crystal Structure Of Mmp8 Complexed With Hmr2909
authors	H.Schreuder, V.Brachvogel, P.Loenze
compound		source
Molecule: Neutrophil Collagenase Chain: A Fragment: Catalytic Domain Synonym: Mmp-8 Ec: 3.4.24.34 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell: Neutrophil Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Bl21 Expression_system_plasmid: Pet
symmetry	Space Group: P 21 21 21	R_factor 0.192 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.100 68.900 70.500 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	BSI, CA, EPE, ZN	enzyme	Hydrolase E.C.3.4.24.34 BRENDA
related structures	by homologous chain: 1KBC, 830C
Gene Ontology	Chain Function Process Component A
Primary reference	Quantitative structure-activity relationship of human neutrophil collagenase (MMP-8) inhibitors using comparative molecular field analysis and X-ray structure analysis., Matter H, Schwab W, Barbier D, Billen G, Haase B, Neises B, Schudok M, Thorwart W, Schreuder H, Brachvogel V, Lonze P, Weithmann KU, J Med Chem 1999 Jun 3;42(11):1908-20. PMID:10354399

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk] Biological Unit Coordinates (1bzs.pdb1.gz) 32 Kb LPC: Ligand-Protein Contacts for 1BZS CSU: Contacts of Structural Units for 1BZS Likely Quarternary Molecular Structure file(s) for 1BZS Structure Factors (178 Kb) Retrieve 1BZS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BZS from S2C, [Save to disk] Re-refined 1bzs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1BZS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BZS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BZS, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bzsa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bzs] [1bzs_A] SWISS-PROT database: [P22894] Domain organization of [MMP8_HUMAN] by SWISSPFAM Domain found in 1BZS: [ZnMc ] by SMART

Other resources with information on 1BZS

Community annotation for 1BZS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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