1CLY Immunoglobulin date Mar 15, 1995
title Igg Fab (Human Igg1, Kappa) Chimeric Fragment (Cbr96) Comple Lewis Y Nonoate Methyl Ester
authors S.Sheriff, J.Bajorath
compound source
Molecule: Igg Fab (Human Igg1, Kappa)
Chain: L
Fragment: Chimeric Fragment (Br96)
Synonym: Cbr96 Fab (Immunoglobulin)
Engineered: Yes
Other_details: Complexed With Lewis Y Nonoate Methyl Ester
Fragment: Ch1, Igg1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Hybridoma Produced By Fusioning Balbc Splee With P2x63-Ag 8.653 Mouse Myeloma Cells. Human Constant Reg Introduced By Homologous Recombination;

Molecule: Igg Fab (Human Igg1, Kappa)
Chain: H
Fragment: Chimeric Fragment (Br96)
Synonym: Cbr96 Fab (Immunoglobulin)
Engineered: Yes
Other_details: Complexed With Lewis Y Nonoate Methyl Ester

Fragment: Ch1, Igg1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Hybridoma Produced By Fusioning Balbc Splee With P2x63-Ag 8.653 Mouse Myeloma Cells. Human Constant Reg Introduced By Homologous Recombination
symmetry Space Group: P 43 21 2
R_factor 0.238 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.700 81.700 166.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand FUC, GAL, NAG, NON enzyme
related structures by homologous chain: 1MEL, 1Q1J, 1T4K
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceThe x-ray structure of an anti-tumour antibody in complex with antigen., Jeffrey PD, Bajorath J, Chang CY, Yelton D, Hellstrom I, Hellstrom KE, Sheriff S, Nat Struct Biol 1995 Jun;2(6):466-71. PMID:7664109
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1cly.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 1CLY
  • CSU: Contacts of Structural Units for 1CLY
  • Likely Quarternary Molecular Structure file(s) for 1CLY
  • Structure Factors (151 Kb)
  • Retrieve 1CLY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CLY from S2C, [Save to disk]
  • Re-refined 1cly structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1CLY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CLY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CLY, from MSDmotif at EBI
  • Genome occurence of 1CLY's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1clyh1, region H:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1clyh2, region H:114-227 [Jmol] [rasmolscript] [script source]
        - Domain d1clyl2, region L:109-214 [Jmol] [rasmolscript] [script source]
        - Domain d1clyl1, region L:3-108 [Jmol] [rasmolscript] [script source]
  • Fold representative 1cly from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cly_L] [1cly_H] [1cly]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1CLY: [IG_like] [IGv ] by SMART
  • Other resources with information on 1CLY
  • Community annotation for 1CLY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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