1CMO Transcription date May 11, 1999
title Immunoglobulin Motif Dna-Recognition And Heterodimerization For The Pebp2cbf Runt-Domain
authors T.Nagata, V.Gupta, D.Sorce, W.Y.Kim, A.Sali, B.T.Chait, K.Shigesada, Y.Ito, M.H.Werner
compound source
Molecule: Polyomavirus Enhancer Binding Protein 2
Chain: A
Fragment: Core-Binding Factor Alpha B Subunit, Runt Domain
Synonym: Acute Myeloid Leukemia 1 Protein, Aml1osf2, Pebp2-Alpha B;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_cellular_location: Cytoplasm
Expression_system_plasmid: Pqe9
methodSolution NMR
related structures by homologous chain: 1CO1

Primary referenceImmunoglobulin motif DNA recognition and heterodimerization of the PEBP2/CBF Runt domain., Nagata T, Gupta V, Sorce D, Kim WY, Sali A, Chait BT, Shigesada K, Ito Y, Werner MH, Nat Struct Biol 1999 Jul;6(7):615-9. PMID:10404214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1432 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1CMO
  • Retrieve 1CMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CMO from S2C, [Save to disk]
  • View 1CMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CMO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CMO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cmoa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1cmo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cmo_A] [1cmo]
  • SWISS-PROT database: [Q01196]
  • Domain organization of [RUNX1_HUMAN] by SWISSPFAM
  • Other resources with information on 1CMO
  • Community annotation for 1CMO at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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