1D5D		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SET, SO4	enzyme
related structures	by homologous chain: 1FEV, 1R3M
Gene Ontology	Chain Function Process Component B
Primary reference	Thermodynamic and structural studies of cavity formation in proteins suggest that loss of packing interactions rather than the hydrophobic effect dominates the observed energetics., Ratnaparkhi GS, Varadarajan R, Biochemistry 2000 Oct 10;39(40):12365-74. PMID:11015216

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk] Biological Unit Coordinates (1d5d.pdb1.gz) 26 Kb LPC: Ligand-Protein Contacts for 1D5D CSU: Contacts of Structural Units for 1D5D Likely Quarternary Molecular Structure file(s) for 1D5D Structure Factors (40 Kb) Retrieve 1D5D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D5D from S2C, [Save to disk] Re-refined 1d5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1D5D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d5d] [1d5d_A] [1d5d_B] SWISS-PROT database: [P61823] Domain found in 1D5D: [RNAse_Pc ] by SMART

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