1D5G Hydrolase date Oct 07, 1999
title Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide
authors G.Kozlov, K.Gehring, I.Ekiel
compound source
Molecule: Human Phosphatase Hptp1e
Chain: A
Fragment: Pdz2 Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet

Molecule: Peptide Fadseadeneqvsav
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized.
methodSolution NMR
Primary referenceSolution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the beta2-beta3 loop to PDZ domain-ligand interactions., Kozlov G, Banville D, Gehring K, Ekiel I, J Mol Biol 2002 Jul 19;320(4):813-20. PMID:12095257
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (550 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1D5G
  • Original NMR restraints for 1D5G from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1D5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D5G from S2C, [Save to disk]
  • View 1D5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D5G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D5G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d5ga_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1d5g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d5g] [1d5g_B] [1d5g_A]
  • SWISS-PROT database: [Q12923]
  • Domain organization of [PTN13_HUMAN] by SWISSPFAM
  • Domain found in 1D5G: [PDZ ] by SMART
  • Other resources with information on 1D5G
  • Community annotation for 1D5G at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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