1D5L	Oxidoreductase	date	Oct 07, 1999
title	Crystal Structure Of Cyanide-Bound Human Myeloperoxidase Iso Ph 5.5
authors	T.J.Fiedler, C.A.Davey, R.E.Fenna
compound		source
Molecule: Myeloperoxidase Chain: A, B Fragment: Light Chain Ec: 1.11.1.7		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood Cell: Neutrophil
Molecule: Myeloperoxidase Chain: C, D Fragment: Heavy Chain Ec: 1.11.1.7		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood Cell: Neutrophil
symmetry	Space Group: P 1 21 1	R_factor 0.172 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.215 63.507 92.337 90.00 97.43 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	ACT, BMA, CA, CL, CSO, CYN, FUC, HEM, MAN, NAG, SO4	enzyme	Oxidoreductase E.C.1.11.1.7 BRENDA
related structures	by homologous chain: 1DNU, 1DNW
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Human myeloperoxidase: structure of a cyanide complex and its interaction with bromide and thiocyanate substrates at 1.9 A resolution., Blair-Johnson M, Fiedler T, Fenna R, Biochemistry 2001 Nov 20;40(46):13990-7. PMID:11705390

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk] Biological Unit Coordinates (1d5l.pdb1.gz) 203 Kb Biological Unit Coordinates (1d5l.pdb2.gz) 104 Kb Biological Unit Coordinates (1d5l.pdb3.gz) 104 Kb LPC: Ligand-Protein Contacts for 1D5L CSU: Contacts of Structural Units for 1D5L Likely Quarternary Molecular Structure file(s) for 1D5L Structure Factors (619 Kb) Retrieve 1D5L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D5L from S2C, [Save to disk] Re-refined 1d5l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1D5L in 3D

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Visual 3D analysis of 1D5L

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D5L, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d5l.1, region A:,C [Jmol] [rasmolscript] [script source]     - Domain d1d5l.2, region B:,D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d5l_A] [1d5l_D] [1d5l] [1d5l_C] [1d5l_B] SWISS-PROT database: [P05164] Domain organization of [PERM_HUMAN] by SWISSPFAM

Other resources with information on 1D5L

Community annotation for 1D5L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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