1DBV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAD, SO4 enzyme
related structures by homologous chain: 3DBV, 4DBV
Gene
Ontology
ChainFunctionProcessComponent
R, P, O, Q


Primary referenceA crystallographic comparison between mutated glyceraldehyde-3-phosphate dehydrogenases from Bacillus stearothermophilus complexed with either NAD+ or NADP+., Didierjean C, Rahuel-Clermont S, Vitoux B, Dideberg O, Branlant G, Aubry A, J Mol Biol 1997 May 16;268(4):739-59. PMID:9175858
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (1dbv.pdb1.gz) 211 Kb
  • LPC: Ligand-Protein Contacts for 1DBV
  • CSU: Contacts of Structural Units for 1DBV
  • Likely Quarternary Molecular Structure file(s) for 1DBV
  • Structure Factors (291 Kb)
  • Retrieve 1DBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DBV from S2C, [Save to disk]
  • Re-refined 1dbv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dbv_R] [1dbv] [1dbv_O] [1dbv_P] [1dbv_Q]
  • SWISS-PROT database: [P00362]
  • Domain found in 1DBV: [Gp_dh_N ] by SMART

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