1DGQ Immune System date Nov 24, 1999
title Nmr Solution Structure Of The Inserted Domain Of Human Leuko Function Associated Antigen-1
authors G.B.Legge, R.W.Kriwacki, J.Chung, U.Hommel, P.Ramage, D.A.Case, H. P.E.Wright
compound source
Molecule: Leukocyte Function Associated Antigen-1
Chain: A
Fragment: Inserted Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet17b
methodSolution NMR
related structures by homologous chain: 1ZOO
Primary referenceNMR solution structure of the inserted domain of human leukocyte function associated antigen-1., Legge GB, Kriwacki RW, Chung J, Hommel U, Ramage P, Case DA, Dyson HJ, Wright PE, J Mol Biol 2000 Feb 4;295(5):1251-64. PMID:10653701
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1117 Kb) [Save to disk]
  • Biological Unit Coordinates (1dgq.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 1DGQ
  • Original NMR restraints for 1DGQ from PDB
  • Retrieve 1DGQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DGQ from S2C, [Save to disk]
  • View 1DGQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DGQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DGQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dgqa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1dgq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dgq_A] [1dgq]
  • SWISS-PROT database: [P20701]
  • Domain organization of [ITAL_HUMAN] by SWISSPFAM
  • Domain found in 1DGQ: [VWA ] by SMART
  • Other resources with information on 1DGQ
  • Community annotation for 1DGQ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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