1E17 Dna Binding Domain date Apr 25, 2000
title Solution Structure Of The Dna Binding Domain Of The Human Forkhead Transcription Factor Afx (Foxo4)
authors J.Weigelt, I.Climent, K.Dahlman-Wright, M.Wikstrom
compound source
Molecule: Afx
Chain: A
Fragment: Dna Binding Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Nucleus & Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_cellular_location: Cytoplasm
Expression_system_plasmid: Pet15b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference1H, 13C and 15N resonance assignments of the DNA binding domain of the human forkhead transcription factor AFX., Weigelt J, Climent I, Dahlman-Wright K, Wikstrom M, J Biomol NMR 2000 Jun;17(2):181-2. PMID:10921784
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (465 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1E17
  • Original NMR restraints for 1E17 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1E17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E17 from S2C, [Save to disk]
  • View 1E17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E17
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1E17, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e17a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1e17 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e17] [1e17_A]
  • SWISS-PROT database: [P98177]
  • Domain organization of [FOXO4_HUMAN] by SWISSPFAM
  • Domain found in 1E17: [FH ] by SMART
  • Other resources with information on 1E17
  • Community annotation for 1E17 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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