1E3D date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand F3S, FNE, FSX, H2S, MG, SF4 enzyme
related structures by homologous chain: 1H2A, 1H2R
Gene
Ontology
ChainFunctionProcessComponent
C, A


D, B


Primary reference[NiFe] hydrogenase from Desulfovibrio desulfuricans ATCC 27774: gene sequencing, three-dimensional structure determination and refinement at 1.8 A and modelling studies of its interaction with the tetrahaem cytochrome c3., Matias PM, Soares CM, Saraiva LM, Coelho R, Morais J, Le Gall J, Carrondo MA, J Biol Inorg Chem. 2001 Jan;6(1):63-81. PMID:11191224
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (502 Kb) [Save to disk]
  • Biological Unit Coordinates (1e3d.pdb1.gz) 251 Kb
  • Biological Unit Coordinates (1e3d.pdb2.gz) 249 Kb
  • LPC: Ligand-Protein Contacts for 1E3D
  • CSU: Contacts of Structural Units for 1E3D
  • Likely Quarternary Molecular Structure file(s) for 1E3D
  • Structure Factors (2404 Kb)
  • Retrieve 1E3D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E3D from S2C, [Save to disk]
  • Re-refined 1e3d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1E3D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e3d] [1e3d_A] [1e3d_B] [1e3d_C] [1e3d_D]
  • SWISS-PROT database: [Q9L868] [Q9L869]

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