1F5N Signaling Protein date Jun 15, 2000
title Human Guanylate Binding Protein-1 In Complex With The Gtp An Gmppnp.
authors B.Prakash, L.Renault, G.J.K.Praefcke, C.Herrmann, A.Wittinghofer
compound source
Molecule: Interferon-Induced Guanylate-Binding Protein 1
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe9
symmetry Space Group: C 1 2 1
R_factor 0.226 R_Free 0.255
length a length b length c angle alpha angle beta angle gamma
161.228 42.652 91.544 90.00 100.19 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand GNP, MG enzyme
related structures by homologous chain: 1DG3

Primary referenceTriphosphate structure of guanylate-binding protein 1 and implications for nucleotide binding and GTPase mechanism., Prakash B, Renault L, Praefcke GJ, Herrmann C, Wittinghofer A, EMBO J 2000 Sep 1;19(17):4555-64. PMID:10970849
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (1f5n.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 1F5N
  • CSU: Contacts of Structural Units for 1F5N
  • Likely Quarternary Molecular Structure file(s) for 1F5N
  • Retrieve 1F5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F5N from S2C, [Save to disk]
  • View 1F5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F5N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F5N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f5na1, region A:284-583 [Jmol] [rasmolscript] [script source]
        - Domain d1f5na2, region A:7-283 [Jmol] [rasmolscript] [script source]
  • Fold representative 1f5n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f5n] [1f5n_A]
  • SWISS-PROT database: [P32455]
  • Domain organization of [GBP1_HUMAN] by SWISSPFAM
  • Other resources with information on 1F5N
  • Community annotation for 1F5N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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