1F8P Neuropeptide date Jul 03, 2000
title Porcine Neuropeptide Y Bound To Dpc Micelles
authors R.Bader, A.G.Beck-Sickinger, O.Zerbe
compound source
Molecule: Neuropeptide Y (Pnpy)
Chain: A
Engineered: Yes
Other_details: Chemically Synthesized
Synthetic: Yes
Other_details: Occurs In Nervous System Of Pigs
methodSolution NMR
ligand NH2 enzyme
related structures by homologous chain: 1FVN, 1QBF

Primary referenceStructure and dynamics of micelle-bound neuropeptide Y: comparison with unligated NPY and implications for receptor selection., Bader R, Bettio A, Beck-Sickinger AG, Zerbe O, J Mol Biol 2001 Jan 12;305(2):307-29. PMID:11124908
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1F8P
  • CSU: Contacts of Structural Units for 1F8P
  • Original NMR restraints for 1F8P from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1F8P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F8P from S2C, [Save to disk]
  • View 1F8P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F8P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F8P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f8pa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1f8p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f8p_A] [1f8p]
  • SWISS-PROT database: [P01304]
  • Domain organization of [NPY_PIG] by SWISSPFAM
  • Domain found in 1F8P: [PAH ] by SMART
  • Other resources with information on 1F8P
  • Community annotation for 1F8P at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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