1F8Z Lipid Binding Protein date Jul 05, 2000
title Nmr Structure Of The Sixth Ligand-Binding Module Of The Ldl Receptor
authors D.J.Clayton, I.M.Brereton, P.A.Kroon, R.Smith
compound source
Molecule: Low-Density Lipoprotein Receptor
Chain: A
Fragment: Sixth Ligand-Binding Module
Engineered: Yes
Synthetic: Yes
Other_details: Peptide Synthesis - Based On The Human Sequence
methodSolution NMR
ligand CA enzyme
related structures by homologous chain: 1D2J
Primary referenceThree-dimensional NMR structure of the sixth ligand-binding module of the human LDL receptor: comparison of two adjacent modules with different ligand binding specificities., Clayton D, Brereton IM, Kroon PA, Smith R, FEBS Lett 2000 Aug 18;479(3):118-22. PMID:10981718
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1F8Z
  • CSU: Contacts of Structural Units for 1F8Z
  • Original NMR restraints for 1F8Z from PDB
  • Retrieve 1F8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F8Z from S2C, [Save to disk]
  • View 1F8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F8Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F8Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f8za_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1f8z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f8z] [1f8z_A]
  • SWISS-PROT database: [P01130]
  • Domain organization of [LDLR_HUMAN] by SWISSPFAM
  • Domain found in 1F8Z: [LDLa ] by SMART
  • Other resources with information on 1F8Z
  • Community annotation for 1F8Z at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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