1FBV Ligase date Jul 17, 2000
title Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In Ub Protein Ligases
authors N.Zheng, P.Wang, P.D.Jeffrey, N.P.Pavletich
compound source
Molecule: Signal Transduction Protein Cbl
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Zap-70 Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized

Molecule: Ubiquitin-Conjugating Enzyme E12-18 Kda Ubch7
Chain: C
Ec: 6.3.2.19
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 3 2
R_factor 0.227 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
219.000 219.000 219.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand PTR, SO4, ZN enzyme Ligase E.C.6.3.2.19 BRENDA
related structures by homologous chain: 1B47, 1C4Z
Gene
Ontology
ChainFunctionProcessComponent
A


C
  • transcription coactivator ac...


  • Primary referenceStructure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases., Zheng N, Wang P, Jeffrey PD, Pavletich NP, Cell 2000 Aug 18;102(4):533-9. PMID:10966114
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (1fbv.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 1FBV
  • CSU: Contacts of Structural Units for 1FBV
  • Likely Quarternary Molecular Structure file(s) for 1FBV
  • Retrieve 1FBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FBV from S2C, [Save to disk]
  • View 1FBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FBV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FBV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fbva1, region A:178-263 [Jmol] [rasmolscript] [script source]
        - Domain d1fbva3, region A:264-355 [Jmol] [rasmolscript] [script source]
        - Domain d1fbva4, region A:356-434 [Jmol] [rasmolscript] [script source]
        - Domain d1fbva2, region A:47-177 [Jmol] [rasmolscript] [script source]
        - Domain d1fbvc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1fbv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fbv] [1fbv_A] [1fbv_C] [1fbv_B]
  • SWISS-PROT database: [P22681] [P68036]
  • Domain organization of [CBL_HUMAN] [UB2L3_HUMAN] by SWISSPFAM
  • Domains found in 1FBV: [RING] [UBCc ] by SMART
  • Other resources with information on 1FBV
  • Community annotation for 1FBV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1FBV from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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