1FPH Hydrolase Hydrolase Inhibitor date Apr 21, 1993
title The Interaction Of Thrombin With Fibrinogen: A Structural Ba Its Specificity
authors M.T.Stubbs, W.Bode
compound source
Molecule: Alpha-Thrombin (Small Subunit)
Chain: L
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Alpha-Thrombin (Large Subunit)
Chain: H

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Hirudin
Chain: I
Engineered: Yes

Synthetic: Yes

Molecule: Fibrinopeptide A
Chain: F
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 43 21 2
R_factor 0.166 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
90.340 90.340 132.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 0QE, ACE, AR7 enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1ETT, 2HNT, 3HAT


Primary referenceThe interaction of thrombin with fibrinogen. A structural basis for its specificity., Stubbs MT, Oschkinat H, Mayr I, Huber R, Angliker H, Stone SR, Bode W, Eur J Biochem 1992 May 15;206(1):187-95. PMID:1587268
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1fph.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 1FPH
  • CSU: Contacts of Structural Units for 1FPH
  • Likely Quarternary Molecular Structure file(s) for 1FPH
  • Retrieve 1FPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FPH from S2C, [Save to disk]
  • View 1FPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FPH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FPH, from MSDmotif at EBI
  • Genome occurence of 1FPH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fph.1, region L:,H [Jmol] [rasmolscript] [script source]
  • Fold representative 1fph from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fph_I] [1fph] [1fph_F] [1fph_L] [1fph_H]
  • SWISS-PROT database: [P00734]
  • Domain organization of [THRB_HUMAN] by SWISSPFAM
  • Domain found in 1FPH: [Tryp_SPc ] by SMART
  • Other resources with information on 1FPH
  • Community annotation for 1FPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1FPH from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science