1FVT Transferase, Cell Cycle date Sep 20, 2000
title The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In Complex Oxindole Inhibitor
authors S.T.Davis, B.G.Benson, H.N.Bramson, D.E.Chapman, S.H.Dickerson, K D.J.Eberwein, M.Edelstein, S.V.Frye, R.T.Gampe Jr., R.J.Griffin P.A.Harris, A.M.Hassell, W.D.Holmes, R.N.Hunter, V.B.Knick, K.La B.Lovejoy, M.J.Luzzio, D.Murray, P.Parker, W.J.Rocque, L.Shewchu J.M.Veal, D.H.Walker, L.K.Kuyper
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: Cdk2, P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac1 Or Pachlt-A
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.142 72.711 72.933 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 106 enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1H27, 1VYZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePrevention of chemotherapy-induced alopecia in rats by CDK inhibitors., Davis ST, Benson BG, Bramson HN, Chapman DE, Dickerson SH, Dold KM, Eberwein DJ, Edelstein M, Frye SV, Gampe Jr RT, Griffin RJ, Harris PA, Hassell AM, Holmes WD, Hunter RN, Knick VB, Lackey K, Lovejoy B, Luzzio MJ, Murray D, Parker P, Rocque WJ, Shewchuk L, Veal JM, Walker DH, Kuyper LF, Science 2001 Jan 5;291(5501):134-7. PMID:11141566
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1fvt.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1FVT
  • CSU: Contacts of Structural Units for 1FVT
  • Likely Quarternary Molecular Structure file(s) for 1FVT
  • Structure Factors (237 Kb)
  • Retrieve 1FVT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FVT from S2C, [Save to disk]
  • Re-refined 1fvt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FVT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FVT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FVT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fvta_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1fvt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fvt_A] [1fvt]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1FVT: [S_TKc ] by SMART
  • Other resources with information on 1FVT
  • Community annotation for 1FVT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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