1FZC	Blood Coagulation	date	May 19, 1998
title	Crystal Structure Of Fragment Double-D From Human Fibrin Wit Different Bound Ligands
authors	S.J.Everse, G.Spraggon, L.Veerapandian, M.Riley, R.F.Doolittle
compound		source
Molecule: Fibrin Chain: A, D Fragment: Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Blood Tissue: Blood
Molecule: Fibrin Chain: B, E Fragment: Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Blood Tissue: Blood
Molecule: Fibrin Chain: C, F Fragment: Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Blood Tissue: Blood
Molecule: Fibrin Chain: G, H Fragment: Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood
Molecule: Fibrin Chain: I, J Fragment: Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood
symmetry	Space Group: P 1 21 1	R_factor 0.220 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.443 95.600 113.641 90.00 90.19 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CA, MAN, NAG	enzyme
note	1FZC (Molecule of the Month:pdb83)
related structures	by homologous chain: 1RE3, 2FIB
Gene Ontology	Chain Function Process Component A, D E, B F, C
Primary reference	Crystal structure of fragment double-D from human fibrin with two different bound ligands., Everse SJ, Spraggon G, Veerapandian L, Riley M, Doolittle RF, Biochemistry 1998 Jun 16;37(24):8637-42. PMID:9628725

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk] Biological Unit Coordinates (1fzc.pdb1.gz) 231 Kb LPC: Ligand-Protein Contacts for 1FZC CSU: Contacts of Structural Units for 1FZC Likely Quarternary Molecular Structure file(s) for 1FZC Retrieve 1FZC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FZC from S2C, [Save to disk]

View 1FZC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FZC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FZC, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fzca_, region A [Jmol] [rasmolscript] [script source]     - Domain d1fzcb2, region B:151-199 [Jmol] [rasmolscript] [script source]     - Domain d1fzcb1, region B:200-458 [Jmol] [rasmolscript] [script source]     - Domain d1fzcc1, region C:142-397 [Jmol] [rasmolscript] [script source]     - Domain d1fzcc2, region C:97-141 [Jmol] [rasmolscript] [script source]     - Domain d1fzcd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1fzce2, region E:151-199 [Jmol] [rasmolscript] [script source]     - Domain d1fzce1, region E:200-458 [Jmol] [rasmolscript] [script source]     - Domain d1fzcf1, region F:142-397 [Jmol] [rasmolscript] [script source]     - Domain d1fzcf2, region F:97-141 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fzc_F] [1fzc_E] [1fzc_A] [1fzc_I] [1fzc_H] [1fzc_J] [1fzc_D] [1fzc_G] [1fzc_C] [1fzc] [1fzc_B] SWISS-PROT database: [P02671] [P02675] [P02679] Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM Domain found in 1FZC: [FBG ] by SMART

Other resources with information on 1FZC

Community annotation for 1FZC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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