1G1E Transcription date Oct 11, 2000
title Nmr Structure Of The Human Mad1 Transrepression Domain Sid In Complex With Mammalian Sin3a Pah2 Domain
authors K.Brubaker, S.M.Cowley, K.Huang, R.N.Eisenman, I.Radhakrishnan
compound source
Molecule: Mad1 Protein
Chain: A
Fragment: Sin3 Interaction Domain (Sid) Transrepression Domain;
Synonym: Max Dimerization Protein
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Sequence Was Synthesized Via Automated Methods. The Sequence Is Naturally Found In Homo Sapiens (Human).;

Molecule: Sin3a
Chain: B
Fragment: Paired Amphipathic Helix 2 (Pah2 Repeat)
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet24
methodSolution NMR
related structures by homologous chain: 1PD7, 1S5R

Primary referenceSolution structure of the interacting domains of the Mad-Sin3 complex: implications for recruitment of a chromatin-modifying complex., Brubaker K, Cowley SM, Huang K, Loo L, Yochum GS, Ayer DE, Eisenman RN, Radhakrishnan I, Cell 2000 Nov 10;103(4):655-65. PMID:11106735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (434 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1G1E
  • Original NMR restraints for 1G1E from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1G1E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G1E from S2C, [Save to disk]
  • View 1G1E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G1E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1G1E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g1eb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1g1e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g1e_B] [1g1e_A] [1g1e]
  • SWISS-PROT database: [Q05195] [Q60520]
  • Domain organization of [MAD1_HUMAN] [SIN3A_MOUSE] by SWISSPFAM
  • Other resources with information on 1G1E
  • Community annotation for 1G1E at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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