1GH2 Electron Transport date Nov 01, 2000
title Crystal Structure Of The Catalytic Domain Of A New Human Thioredoxin-Like Protein
authors J.Jin, X.Chen, Q.Guo, J.Yuan, B.Qiang, Z.Rao
compound source
Molecule: Thioredoxin-Like Protein
Chain: A
Fragment: Residues 2 - 108, Catalytic N-Terminal Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Fetal Brain
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-3
symmetry Space Group: C 1 2 1
R_factor 0.221 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.500 48.500 29.800 90.00 99.59 90.00
method X-Ray Diffractionresolution 2.22 Å
Primary referenceCrystal structure of the catalytic domain of a human thioredoxin-like protein., Jin J, Chen X, Zhou Y, Bartlam M, Guo Q, Liu Y, Sun Y, Gao Y, Ye S, Li G, Rao Z, Qiang B, Yuan J, Eur J Biochem 2002 Apr;269(8):2060-8. PMID:11985582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1gh2.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 1GH2
  • Likely Quarternary Molecular Structure file(s) for 1GH2
  • Retrieve 1GH2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GH2 from S2C, [Save to disk]
  • View 1GH2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GH2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GH2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gh2a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1gh2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gh2] [1gh2_A]
  • SWISS-PROT database: [O43396]
  • Domain organization of [TXNL1_HUMAN] by SWISSPFAM
  • Other resources with information on 1GH2
  • Community annotation for 1GH2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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