1GMY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AEM, APD, DFA enzyme
related structures by homologous chain: 1THE
Gene
Ontology
ChainFunctionProcessComponent
A, B, C


Primary referenceIdentification of dipeptidyl nitriles as potent and selective inhibitors of cathepsin B through structure-based drug design., Greenspan PD, Clark KL, Tommasi RA, Cowen SD, McQuire LW, Farley DL, van Duzer JH, Goldberg RL, Zhou H, Du Z, Fitt JJ, Coppa DE, Fang Z, Macchia W, Zhu L, Capparelli MP, Goldstein R, Wigg AM, Doughty JR, Bohacek RS, Knap AK, J Med Chem 2001 Dec 20;44(26):4524-34. PMID:11741472
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (1gmy.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (1gmy.pdb2.gz) 45 Kb
  • Biological Unit Coordinates (1gmy.pdb3.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1GMY
  • CSU: Contacts of Structural Units for 1GMY
  • Likely Quarternary Molecular Structure file(s) for 1GMY
  • Structure Factors (501 Kb)
  • Retrieve 1GMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GMY from S2C, [Save to disk]
  • Re-refined 1gmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1GMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gmy] [1gmy_A] [1gmy_B] [1gmy_C]
  • SWISS-PROT database: [P07858]
  • Domain found in 1GMY: [Pept_C1 ] by SMART

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