1GO5 Nuclear Transport date Oct 18, 2001
title Structure Of The C-Terminal Fg-Binding Domain Of Human Tap
authors R.P.Grant, E.Hurt, D.Neuhaus, M.Stewart
compound source
Molecule: Tip Associating Protein
Chain: A
Fragment: Residues 551-619
Synonym: Tap, Nuclear Rna Export Factor 1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pmw172
methodSolution NMR
related structures by homologous chain: 1OAI
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the C-terminal FG-nucleoporin binding domain of Tap/NXF1., Grant RP, Hurt E, Neuhaus D, Stewart M, Nat Struct Biol 2002 Apr;9(4):247-51. PMID:11875519
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (459 Kb) [Save to disk]
  • Biological Unit Coordinates (1go5.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 1GO5
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1GO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GO5 from S2C, [Save to disk]
    • View 1GO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GO5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GO5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1go5a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1go5_A] [1go5]
  • SWISS-PROT database: [Q9UBU9]
  • Belongs to the nuclear mrna exporter (mrna-e) family according to TCDB.
  • Domain organization of [NXF1_HUMAN] by SWISSPFAM
  • Domain found in 1GO5: [TAP_C ] by SMART
    • Other resources with information on 1GO5
  • Community annotation for 1GO5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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