1GYU Endocytosis date Apr 30, 2002
title Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1
authors P.R.Evans, D.J.Owen, H.M.Mcmahon, H.M.Kent
compound source
Molecule: Adapter-Related Protein Complex 1 Gamma 1 Subunit
Chain: A
Fragment: Appendage Domain, Residues 703-821
Synonym: Gamma-Adaptin, Golgi Adaptor Ha1ap1 Adaptin Gamma Clathrin Assembly Protein Complex 1 Gamma Large Chain;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.175 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.090 54.820 68.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.81 Å
note 1GYU (Molecule of the Month:pdb88)
related structures by homologous chain: 1GYW, 1IU1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGamma-adaptin appendage domain: structure and binding site for Eps15 and gamma-synergin., Kent HM, McMahon HT, Evans PR, Benmerah A, Owen DJ, Structure (Camb) 2002 Aug;10(8):1139-48. PMID:12176391
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1gyu.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1GYU
  • Likely Quarternary Molecular Structure file(s) for 1GYU
  • Structure Factors (236 Kb)
  • Retrieve 1GYU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GYU from S2C, [Save to disk]
  • Re-refined 1gyu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GYU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GYU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GYU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gyua_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1gyu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gyu] [1gyu_A]
  • SWISS-PROT database: [P22892]
  • Domain organization of [AP1G1_MOUSE] by SWISSPFAM
  • Domain found in 1GYU: [Alpha_adaptinC2 ] by SMART
  • Other resources with information on 1GYU
  • Community annotation for 1GYU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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