1HRA Dna-Binding Receptor date Jul 25, 1993
title The Solution Structure Of The Human Retinoic Acid Receptor- Beta Dna-Binding Domain
authors R.M.A.Knegtel, M.Katahira, J.G.Schilthuis, A.M.J.J.Bonvin, R.Boelens, D.Eib, P.T.Van Der Saag, R.Kaptein
compound source
Molecule: Retinoic Acid Receptor
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1HLZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of the human retinoic acid receptor-beta DNA-binding domain., Knegtel RM, Katahira M, Schilthuis JG, Bonvin AM, Boelens R, Eib D, van der Saag PT, Kaptein R, J Biomol NMR 1993 Jan;3(1):1-17. PMID:8383553
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1HRA
  • CSU: Contacts of Structural Units for 1HRA
  • Retrieve 1HRA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HRA from S2C, [Save to disk]
  • View 1HRA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HRA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HRA, from MSDmotif at EBI
  • Genome occurence of 1HRA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hra__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1hra from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hra_A] [1hra]
  • SWISS-PROT database: [P10826]
  • Domain organization of [RARB_HUMAN] by SWISSPFAM
  • Domain found in 1HRA: [ZnF_C4 ] by SMART
  • Other resources with information on 1HRA
  • Community annotation for 1HRA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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