1J0W Transferase date Nov 25, 2002
title Crystal Structure Analysis Of The Dok-5 Ptb Domain
authors N.Shi, Y.Ding, B.Q.Qiang, J.G.Yuan, Z.H.Rao
compound source
Molecule: Downstream Of Tyrosine Kinase 5
Chain: A, B
Synonym: Dok-5 Ptb Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dok5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.226 R_Free 0.270
length a length b length c angle alpha angle beta angle gamma
75.890 75.890 107.960 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand MSE enzyme Transferase E.C. BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1j0w.pdb1.gz) 18 Kb
  • Biological Unit Coordinates (1j0w.pdb2.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1J0W
  • CSU: Contacts of Structural Units for 1J0W
  • Likely Quarternary Molecular Structure file(s) for 1J0W
  • Structure Factors (242 Kb)
  • Retrieve 1J0W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J0W from S2C, [Save to disk]
  • Re-refined 1j0w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J0W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J0W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J0W, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j0wa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j0wb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1j0w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j0w_B] [1j0w] [1j0w_A]
  • SWISS-PROT database: [Q9P104]
  • Domain organization of [DOK5_HUMAN] by SWISSPFAM
  • Domains found in 1J0W: [IRS] [PTBI ] by SMART
  • Other resources with information on 1J0W
  • Community annotation for 1J0W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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