1J47 Transcription Dna date Jul 23, 2001
title 3d Solution Nmr Structure Of The M9i Mutant Of The Hmg-Box D The Human Male Sex Determining Factor Sry Complexed To Dna
authors G.M.Clore, E.C.Murphy
compound source
Molecule: 5'-D(Cpcptpgpcpapcpapapapcpapcpc)-3
Chain: B
Engineered: Yes
 Synthetic: Yes

Molecule: 5'-D(Gpgptpgptptptpgptpgpcpapgpg)-3
Chain: C
Engineered: Yes
Synthetic: Yes

Molecule: Sex-Determining Region Y Protein
Chain: A
Fragment: Hmg-Box Domain
Synonym: Sry
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet21a
methodSolution NMR
related structures by homologous chain: 1J46
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation., Murphy EC, Zhurkin VB, Louis JM, Cornilescu G, Clore GM, J Mol Biol 2001 Sep 21;312(3):481-99. PMID:11563911
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1j47.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 1J47
  • Retrieve 1J47 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J47 from S2C, [Save to disk]
    • View 1J47 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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    • Visual 3D analysis of 1J47
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J47, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j47a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j47_B] [1j47_C] [1j47_A] [1j47]
  • SWISS-PROT database: [Q05066]
  • Domain organization of [SRY_HUMAN] by SWISSPFAM
  • Domain found in 1J47: [HMG ] by SMART
    • Other resources with information on 1J47
  • Community annotation for 1J47 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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