1J4W Transcription Dna date Nov 30, 2001
title Complex Of The Kh3 And Kh4 Domains Of Fbp With A Single_stranded 29mer Dna Oligonucleotide From The Fuse Element Of The C-Myc Oncogene
authors G.M.Clore, D.T.Braddock
compound source
Molecule: Fuse Binding Protein
Chain: A
Fragment: Residues 278-447, Numberered 5-174. Kh3 And Kh4 Domains.;
Synonym: Fbp, Far Upstream Binding Element Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Be23
Expression_system_plasmid: Pet15b

Molecule: Dna (5'- D(Gptpatpaptptpcpcpcptpcpgpgpgaptptptpt Ptptpaptptptptpgpt)-3');
Chain: B
Engineered: Yes
Other_details: From The Fuse Element Of The C-Myc Oncogene

Synthetic: Yes
methodSolution NMR

Primary referenceStructure and dynamics of KH domains from FBP bound to single-stranded DNA., Braddock DT, Louis JM, Baber JL, Levens D, Clore GM, Nature 2002 Feb 28;415(6875):1051-6. PMID:11875576
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1J4W
  • Retrieve 1J4W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J4W from S2C, [Save to disk]
  • View 1J4W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J4W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J4W, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j4wa1, region A:1-74 [Jmol] [rasmolscript] [script source]
        - Domain d1j4wa2, region A:104-174 [Jmol] [rasmolscript] [script source]
  • Fold representative 1j4w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j4w] [1j4w_A] [1j4w_B]
  • SWISS-PROT database: [Q96AE4]
  • Domain organization of [FUBP1_HUMAN] by SWISSPFAM
  • Domain found in 1J4W: [KH ] by SMART
  • Other resources with information on 1J4W
  • Community annotation for 1J4W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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