1JAN Hydrolase Hydrolase Inhibitor date Mar 11, 1996
title Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic Doma Matrix Metallo Proteinase-8 (Phe79 Form)
authors P.Reinemer, F.Grams, R.Huber, T.Kleine, S.Schnierer, M.Pieper, H.T W.Bode
compound source
Molecule: Matrix Metallo Proteinase-8 (Phe79 Form)
Chain: A
Fragment: Catalytic Domain, Residues 79 - 242
Synonym: Mmp-8-Phe79 Form
Ec: 3.4.24.34
Engineered: Yes
Other_details: Mmp-8 Is Identical To The Human Neutrophil Collagenase;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Neutrophils
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Pro-Leu-Gly-Hydroxylamine Inhibitor
Chain: I
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.210 69.530 72.540 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CA, HOA, ZN enzyme Hydrolase E.C.3.4.24.34 BRENDA
related structures by homologous chain: 1FBL, 456C
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural implications for the role of the N terminus in the 'superactivation' of collagenases. A crystallographic study., Reinemer P, Grams F, Huber R, Kleine T, Schnierer S, Piper M, Tschesche H, Bode W, FEBS Lett 1994 Jan 31;338(2):227-33. PMID:8307185
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1jan.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1JAN
  • CSU: Contacts of Structural Units for 1JAN
  • Likely Quarternary Molecular Structure file(s) for 1JAN
  • Retrieve 1JAN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JAN from S2C, [Save to disk]
  • View 1JAN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JAN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JAN, from MSDmotif at EBI
  • Genome occurence of 1JAN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jana_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1jan from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jan_A] [1jan] [1jan_I]
  • SWISS-PROT database: [P22894]
  • Domain organization of [MMP8_HUMAN] by SWISSPFAM
  • Domain found in 1JAN: [ZnMc ] by SMART
  • Other resources with information on 1JAN
  • Community annotation for 1JAN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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