OCA Atlas for 1JKE

1JKE

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

related structures

by homologous chain: 1J7G

Gene
Ontology

Chain	Function	Process	Component
C, D, A, B	aminoacyl-tRNA editing activ... D-aminoacyl-tRNA deacylase a... D-tyrosyl-tRNA(Tyr) deacylas... Gly-tRNA(Ala) hydrolase acti...

Primary reference

Structure of crystalline D-Tyr-tRNA(Tyr) deacylase. A representative of a new class of tRNA-dependent hydrolases., Ferri-Fioni ML, Schmitt E, Soutourina J, Plateau P, Mechulam Y, Blanquet S, J Biol Chem 2001 Dec 14;276(50):47285-90. PMID:11568181

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]

Biological Unit Coordinates (1jke.pdb1.gz) 49 Kb

Biological Unit Coordinates (1jke.pdb2.gz) 50 Kb

Biological Unit Coordinates (1jke.pdb3.gz) 193 Kb

Biological Unit Coordinates (1jke.pdb4.gz) 97 Kb

Biological Unit Coordinates (1jke.pdb5.gz) 97 Kb

Biological Unit Coordinates (1jke.pdb6.gz) 49 Kb

Biological Unit Coordinates (1jke.pdb7.gz) 50 Kb

LPC: Ligand-Protein Contacts for 1JKE

CSU: Contacts of Structural Units for 1JKE

Likely Quarternary Molecular Structure file(s) for 1JKE

Retrieve 1JKE in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1JKE from S2C, [Save to disk]

View 1JKE in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jke] [1jke_A] [1jke_B] [1jke_C] [1jke_D]

SWISS-PROT database: [P0A6M4]

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