1JN5 Transport Protein date Jul 23, 2001
title Structural Basis For The Recognition Of A Nucleoporin Fg- Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export Factor
authors S.Fribourg, I.C.Braun, E.Izaurralde, E.Conti
compound source
Molecule: P15
Chain: A
Synonym: Ntf2-Related Export Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28c

Molecule: Tap
Chain: B
Fragment: Residues 371-619
Synonym: Tip Associating Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Cs

Molecule: Fg-Repeat
Chain: C
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.
symmetry Space Group: P 65 2 2
R_factor 0.241 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.200 105.200 172.960 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
related structures by homologous chain: 1JKG
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis for the recognition of a nucleoporin FG repeat by the NTF2-like domain of the TAP/p15 mRNA nuclear export factor., Fribourg S, Braun IC, Izaurralde E, Conti E, Mol Cell 2001 Sep;8(3):645-56. PMID:11583626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1jn5.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (1jn5.pdb2.gz) 52 Kb
  • CSU: Contacts of Structural Units for 1JN5
  • Likely Quarternary Molecular Structure file(s) for 1JN5
  • Structure Factors (126 Kb)
  • Retrieve 1JN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JN5 from S2C, [Save to disk]
  • Re-refined 1jn5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JN5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JN5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jn5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jn5b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1jn5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jn5_A] [1jn5_C] [1jn5] [1jn5_B]
  • SWISS-PROT database: [Q9UBU9] [Q9UKK6]
  • Belongs to the nuclear mrna exporter (mrna-e) family according to TCDB.
  • Domain organization of [NXF1_HUMAN] [NXT1_HUMAN] by SWISSPFAM
  • Domain found in 1JN5: [TAP_C ] by SMART
  • Other resources with information on 1JN5
  • Community annotation for 1JN5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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