1K5D date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GNP, MG enzyme
related structures by homologous chain: 1RRP, 1YRG, 2BKU
Gene
Ontology
ChainFunctionProcessComponent
H, B, K, E
  • GDP-dissociation inhibitor a...
  • GTPase activator activity


    • J, G, D, A
  • intracellular transport of v...

    • L, C, I, F
  • GTPase activator activity


    • Primary referenceRanGAP mediates GTP hydrolysis without an arginine finger., Seewald MJ, Korner C, Wittinghofer A, Vetter IR, Nature 2002 Feb 7;415(6872):662-6. PMID:11832950
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (426 Kb) [Save to disk]
  • Biological Unit Coordinates (1k5d.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (1k5d.pdb2.gz) 109 Kb
  • Biological Unit Coordinates (1k5d.pdb3.gz) 110 Kb
  • Biological Unit Coordinates (1k5d.pdb4.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 1K5D
  • CSU: Contacts of Structural Units for 1K5D
  • Likely Quarternary Molecular Structure file(s) for 1K5D
  • Structure Factors (1267 Kb)
  • Retrieve 1K5D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K5D from S2C, [Save to disk]
  • Re-refined 1k5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1K5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k5d] [1k5d_A] [1k5d_B] [1k5d_C] [1k5d_D] [1k5d_E] [1k5d_F] [1k5d_G] [1k5d_H] [1k5d_I] [1k5d_J] [1k5d_K] [1k5d_L]
  • SWISS-PROT database: [P43487] [P62826] [P41391]
  • Belongs to the small nuclear rna exporter (snrna-e) according to TCDB.
  • Domains found in 1K5D: [LRR] [RAN] [RanBD ] by SMART

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