1KKQ	Transcription	date	Dec 10, 2001
title	Crystal Structure Of The Human Ppar-Alpha Ligand-Binding Dom Complex With An Antagonist Gw6471 And A Smrt Corepressor Mo
authors	H.E.Xu, T.B.Stanley, V.G.Montana, M.H.Lambert, B.G.Shearer, J.E.C D.D.Mckee, C.M.Galardi, R.T.Nolte, D.J.Parks
compound		source
Molecule: Peroxisome Proliferator Activated Receptor Chain: A, B, C, D Fragment: Ppar-Alpha Lbd Synonym: Ppar-Alpha Ligand-Binding Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Human Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Expression_system_organ: Liver Expression_system_vector_type: T7 Promoter From Prseta Expression_system_plasmid: Prseta
Molecule: Nuclear Receptor Co-Repressor 2 Chain: E, F, G, H Fragment: Smrt Receptor Interacting Motif Synonym: Nuclear Corepressor Smrt C-Terminal Receptor Inter Motif; Engineered: Yes		Synthetic: Yes Other_details: Smrt Receptor Interacting Motif: This Sequen Naturally In Humans.
symmetry	Space Group: P 21 21 21	R_factor 0.258 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.409 112.773 123.954 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	471 BindingDB	enzyme
related structures	by homologous chain: 4PRG
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural basis for antagonist-mediated recruitment of nuclear co-repressors by PPARalpha., Xu HE, Stanley TB, Montana VG, Lambert MH, Shearer BG, Cobb JE, McKee DD, Galardi CM, Plunket KD, Nolte RT, Parks DJ, Moore JT, Kliewer SA, Willson TM, Stimmel JB, Nature. 2002 Feb 14;415(6873):813-7. PMID:11845213

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk] Biological Unit Coordinates (1kkq.pdb1.gz) 50 Kb Biological Unit Coordinates (1kkq.pdb2.gz) 50 Kb Biological Unit Coordinates (1kkq.pdb3.gz) 50 Kb Biological Unit Coordinates (1kkq.pdb4.gz) 50 Kb LPC: Ligand-Protein Contacts for 1KKQ CSU: Contacts of Structural Units for 1KKQ Likely Quarternary Molecular Structure file(s) for 1KKQ Retrieve 1KKQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1KKQ from S2C, [Save to disk]

View 1KKQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1KKQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1KKQ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1kkqa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1kkqb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1kkqc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1kkqd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1kkq] [1kkq_E] [1kkq_H] [1kkq_C] [1kkq_A] [1kkq_B] [1kkq_F] [1kkq_G] [1kkq_D] SWISS-PROT database: [Q9Y618] [Q07869] Domain organization of [NCOR2_HUMAN] [PPARA_HUMAN] by SWISSPFAM Domain found in 1KKQ: [HOLI ] by SMART

Other resources with information on 1KKQ

Community annotation for 1KKQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---