1LB5	Signaling Protein	date	Apr 02, 2002
title	Traf6-Rank Complex
authors	H.Ye, J.R.Arron, B.Lamothe, M.Cirilli, T.Kobayashi, N.K.Shevde, D. O.Dzivenu, M.Vologodskaia, M.Yim, K.Du, S.Singh, J.W.Pike, B.G.Da Y.Choi, H.Wu
compound		source
Molecule: Tnf Receptor-Associated Factor 6 Chain: A Fragment: Residues 347-504 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Traf6 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Receptor Activator Of Nuclear Factor-Kappa B Chain: B Fragment: Residues 342-349 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rank Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.213 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.990 44.991 106.535 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
related structures	by homologous chain: 1LB4
Gene Ontology	Chain Function Process Component A
Primary reference	Distinct molecular mechanism for initiating TRAF6 signalling., Ye H, Arron JR, Lamothe B, Cirilli M, Kobayashi T, Shevde NK, Segal D, Dzivenu OK, Vologodskaia M, Yim M, Du K, Singh S, Pike JW, Darnay BG, Choi Y, Wu H, Nature 2002 Jul 25;418(6896):443-7. PMID:12140561

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (1lb5.pdb1.gz) 28 Kb CSU: Contacts of Structural Units for 1LB5 Likely Quarternary Molecular Structure file(s) for 1LB5 Retrieve 1LB5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LB5 from S2C, [Save to disk]

View 1LB5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LB5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LB5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1lb5a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1lb5_B] [1lb5] [1lb5_A] SWISS-PROT database: [Q9Y4K3] Domain organization of [TRAF6_HUMAN] by SWISSPFAM Domain found in 1LB5: [MATH ] by SMART

Other resources with information on 1LB5

Community annotation for 1LB5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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