1LDK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ZN	enzyme
note	1LDK (Molecule of the Month:pdb60)
Gene Ontology	Chain Function Process Component A B C D
Primary reference	Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex., Zheng N, Schulman BA, Song L, Miller JJ, Jeffrey PD, Wang P, Chu C, Koepp DM, Elledge SJ, Pagano M, Conaway RC, Conaway JW, Harper JW, Pavletich NP, Nature 2002 Apr 18;416(6882):703-9. PMID:11961546

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk] Biological Unit Coordinates (1ldk.pdb1.gz) 158 Kb Biological Unit Coordinates (1ldk.pdb2.gz) 313 Kb LPC: Ligand-Protein Contacts for 1LDK CSU: Contacts of Structural Units for 1LDK Likely Quarternary Molecular Structure file(s) for 1LDK Retrieve 1LDK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LDK from S2C, [Save to disk]

View 1LDK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ldk_B] [1ldk_A] [1ldk] [1ldk_C] [1ldk_D] [1ldk_E] SWISS-PROT database: [Q13616] [P62877] [P63208] [Q13309] Domains found in 1LDK: [CULLIN] [Cullin_Nedd8] [FBOX] [RING] [Skp1 ] by SMART

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