1LLM Transcription Dna date Apr 29, 2002
title Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
authors S.A.Wolfe, R.A.Grant, C.O.Pabo
compound source
Molecule: 5'-D(Tpcpcpcpapcpgpcpgptpgpgpg)-3'
Chain: A, B
Engineered: Yes
Synthetic: Yes

Molecule: Chimera Of Zif23-Gcn4
Chain: C, D
Engineered: Yes
Other_details: The Zif23 Section Of The Chimera Is Residues Is Derived From Zif268. The Gcn4 Section Is Residues 60-88.

Organism_scientific: Mus Musculus, Saccharomyces Cerevisiae
Organism_common: House Mouse, Baker'S Yeast
Organism_taxid: 10090, 4932
Strain: ,
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3 Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: P 31 2 1
R_factor 0.216 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.398 87.398 118.693 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand ZN enzyme
related structures by homologous chain: 1A1I, 2BNI
Primary referenceStructure of a designed dimeric zinc finger protein bound to DNA., Wolfe SA, Grant RA, Pabo CO, Biochemistry. 2003 Nov 25;42(46):13401-9. PMID:14621985
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1llm.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 1LLM
  • CSU: Contacts of Structural Units for 1LLM
  • Likely Quarternary Molecular Structure file(s) for 1LLM
  • Retrieve 1LLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LLM from S2C, [Save to disk]
  • View 1LLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LLM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1LLM 1LLMA 1LLMB 1LLMC 1LLMD from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LLM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1llmc1, region C:101-128 [Jmol] [rasmolscript] [script source]
        - Domain d1llmc2, region C:129-156 [Jmol] [rasmolscript] [script source]
        - Domain d1llmd1, region D:201-228 [Jmol] [rasmolscript] [script source]
        - Domain d1llmd2, region D:229-256 [Jmol] [rasmolscript] [script source]
  • Fold representative 1llm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1llm_D] [1llm] [1llm_C] [1llm_B] [1llm_A]
  • SWISS-PROT database: [P08046] [P03069]
  • Domain organization of [EGR1_MOUSE] [GCN4_YEAST] by SWISSPFAM
  • Domain found in 1LLM: [ZnF_C2H2 ] by SMART
  • Other resources with information on 1LLM
  • Community annotation for 1LLM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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