1LV2 Transcription date May 24, 2002
title Hepatocyte Nuclear Factor 4 Is A Transcription Factor That Constitutively Binds Fatty Acids
authors B.Wisely, A.B.Miller, R.G.Davis, T.Spitzer, B.Shearer, J.T.Moore, R.Johnson, A.Sefler, T.M.Willson, S.P.Williams
compound source
Molecule: Hepatocyte Nuclear Factor 4-Gamma
Chain: A
Fragment: Hnf4g Lbd (Residues 103-328)
Synonym: Hnf-4-Gamma
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hnf4g
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21[De3]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prseta
symmetry Space Group: I 41 2 2
R_factor 0.245 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.708 152.708 93.421 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand PLM enzyme
related structures by homologous chain: 1M7W, 1PZL
Primary referenceHepatocyte nuclear factor 4 is a transcription factor that constitutively binds fatty acids., Wisely GB, Miller AB, Davis RG, Thornquest AD Jr, Johnson R, Spitzer T, Sefler A, Shearer B, Moore JT, Miller AB, Willson TM, Williams SP, Structure (Camb) 2002 Sep;10(9):1225-34. PMID:12220494
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1lv2.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1LV2
  • CSU: Contacts of Structural Units for 1LV2
  • Likely Quarternary Molecular Structure file(s) for 1LV2
  • Retrieve 1LV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LV2 from S2C, [Save to disk]
  • View 1LV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LV2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LV2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lv2a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1lv2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lv2] [1lv2_A]
  • SWISS-PROT database: [Q14541]
  • Domain organization of [HNF4G_HUMAN] by SWISSPFAM
  • Domain found in 1LV2: [HOLI ] by SMART
  • Other resources with information on 1LV2
  • Community annotation for 1LV2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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