1LYB date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, IVA, MAN, NAG, STA enzyme
note 1LYB (Molecule of the Month:pdb12)
related structures by homologous chain: 1LYA, 1QDM
Gene
Ontology
ChainFunctionProcessComponent
C, A, B, D


Primary referenceCrystal structures of native and inhibited forms of human cathepsin D: implications for lysosomal targeting and drug design., Baldwin ET, Bhat TN, Gulnik S, Hosur MV, Sowder RC 2nd, Cachau RE, Collins J, Silva AM, Erickson JW, Proc Natl Acad Sci U S A 1993 Jul 15;90(14):6796-800. PMID:8393577
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (1lyb.pdb1.gz) 133 Kb
  • Biological Unit Coordinates (1lyb.pdb2.gz) 68 Kb
  • Biological Unit Coordinates (1lyb.pdb3.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 1LYB
  • CSU: Contacts of Structural Units for 1LYB
  • Likely Quarternary Molecular Structure file(s) for 1LYB
  • Retrieve 1LYB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LYB from S2C, [Save to disk]
    • View 1LYB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lyb] [1lyb_A] [1lyb_B] [1lyb_C] [1lyb_D] [1lyb_I] [1lyb_J]
  • SWISS-PROT database: [P07339]

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